System Configuration

  • The local administrator needs to:

    • Configure the database server which includes uri( DATABSE SERVER URI), port (DATABASE PORT), username (DATABSE USER) and password (DATABSE PASSSWORD)

    • Register your installation with Warwick EnteroBase

    • Test uploading files to Warwick EnteroBase

local Configuration Form

Fig 1 Configuration Form

  • In case of using “local_enterobase_installer.sh” bash script to install the system, then the script will configure the system with the default setting which should be fine for most of cases.

  • The local installation configuration file is saved in the user home folder ($HOME/.local_configuration_file.yml), you can edit it directly using any text editor (e.g. vim) or it can be alerted using “/update_system_configuration” link from the web interface (it will be the default main web page if the database is not configured or not configured correctly in case of manual installation).

  • After any system configuration change, you need to restart the application using the following commands:

    singularity instance  stop local_enterobase
singularity instance start local_enterobase.sif local_enterobase

  • If the local administrator has installed it using the provided bash file, it will create a bash script “restart_local_enterobase.sh” which can be used to restart the singularity container useing the following command:

    ./restart_local_enterobase.sh

Notes

  • It is needed to synchronize the local installation name with the registration form.

  • In case of using the automatic installation, it is needed to get the server URL from the user input during the installation.